CASP9 QA results (Takeda-Shitaka Lab)  
All targets (116)   Single-domain targets only (91)   Multi-domain targets only (25)   TBM targets only (94)   FM targets only (22)   NEW!! Scatter Plots between QAvalue and GDT_TS

The results of Quality Assessment (QA) category in CASP9

-DATA SOURCES

http://predictioncenter.org/download_area/CASP9/predictions/QA_T0515-T0539.tar.gz
http://predictioncenter.org/download_area/CASP9/predictions/QA_T0540-T0569.tar.gz
http://predictioncenter.org/download_area/CASP9/predictions/QA_T0570-T0599.tar.gz
http://predictioncenter.org/download_area/CASP9/predictions/QA_T0600-T0629.tar.gz
http://predictioncenter.org/download_area/CASP9/predictions/QA_T0630-T0643.tar.gz

http://predictioncenter.org/download_area/CASP9/results_LGA_sda/

* In the multiple-segments, we used the GDT_TS of a segment which has the highest GDT_TS for each model. (according to the CASP rule)
(ex) :
GROUP1_TS1_1 GDT_TS=70.0 <-- select
GROUP1_TS1_2 GDT_TS=20.0
GROUP2_TS1_1 GDT_TS=10.0
GROUP2_TS1_2 GDT_TS=40.0 <-- select


-RESULT

category Number of target description
All targets (116) 116 all targets (except canceled targets)
Single-domain targets only (91)
Multi-domain targets only (25)
91
25
categorized by domain (single/multi).
TBM targets only (94)
FM targets only (22)
94
22
categorized by difficulty of each target which was determined by CASP9 assesors.)
* In the multi-domain target, it considered the difficulty as FM if there is as much as one domain which difficulty determined as FM.

target list : casp9_target_list.txt


Pearson avg Pearson's r of predicted and observed model quality scores (MQAS vs GDT) on per-target basis.
Pearson overall Pearson's r of predicted and observed model quality scores (MQAS vs GDT) for all models pooled together.
Kendall avg Kendall's t of predicted and observed model quality scores (MQAS vs GDT) on per-target basis.
Kendall overall Kendall's t of predicted and observed model quality scores (MQAS vs GDT) for all models pooled together.
Avg loss Average (per target) loss from the best available model / ability to pick the best model.


Result pages :
All targets (116)   Single-domain targets only (91)   Multi-domain targets only (25)   TBM targets only (94)   FM targets only (22)

contact: shitakam at pharm.kitasato-u.ac.jp